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  • Home / Windows / Science / CAD
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    CLC Protein Workbench 5.2.0

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    Downloads: 2,780  Add to download basket  Tell us about an update
    User Rating:
    Rated by:
    Good (3.0/5)
    30 user(s)
    Developer:

    License / Price:

    Size / OS:

    Last Updated:

    Category:
    CLC bio | More programs
    Trial / N/A | BUY the full version
    48.7 MB / Windows All
    August 19th, 2009, 06:52 GMT [view history]
    C: \ Science / CAD

     Read user reviews (0)  Add a review  Refer to a friend  Subscribe

     

    CLC Protein Workbench description

     

    A Bioinformatics program for advanced protein sequence analysis

    CLC Protein Workbench is a science application tool that will allow you to analyse proteins.

    CLC Protein Workbench provides a wide range of advanced protein anlyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.

    CLC Protein Workbench includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application.

    Here are some key features of "CLC Protein Workbench":

    · Integrated 3D molecular viewer
    · 2 types of alignments
    · Phylogenetics
    · Secondary protein structure prediction
    · Signal Peptide Prediction (SignalP)
    · Transmembrane helix prediction (TMHMM)
    · Motif search (known patterns)
    · Motif search using regular expressions
    · Motif search using ProSite patterns
    · Pattern discovery (unknown patterns)
    · Web based BLAST
    · BLAST on local databases
    · Batch processing of multiple analyses in one work-step
    · Protein family analysis (PFAM)
    · Dot plots
    · Hydrophobicity analyses
    · Antigenicity analyses
    · Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed
    · Log of actions/analyses performed

    Requirements:

    · 256 MB RAM required
    · 512 MB RAM recommended
    · 1024 x 768 display recommended
    · Java 3D

    Limitations:

    · 30 days trial
    · nag screen

    What's New in This Release: [ read full changelog ]

    New features:
    · Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
    · Advanced view of elements in a folder including batch editing.
    · Extract sequences improvements
    · You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
    · "Find" in text view now accepts Enter as command to find the next hit
    · Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
    · Export of annotations in GFF format (joined regions not supported)

    Bug fixes:
    · Fixed tblastn numbering issue
    · Problem rendering scatter plots without lines
    · DNA strider files could loose name upon import
    · Rare misplacement of annotations when editing very large sequences
    · Various bug-fixes

     Softpedia guarantees that CLC Protein Workbench 5.2.0 is 100% CLEAN, which means it does not contain any form of malware, including spyware, viruses, trojans and backdoors. [read more >]


    TAGS:

    protein sequence | sequence analysis | protein analysis | protein | sequence | bioinformatics



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