CLC Protein Workbench is a science application tool that will allow you to analyse proteins.
CLC Protein Workbench provides a wide range of advanced protein anlyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.
CLC Protein Workbench includes a vast amount of advanced protein sequence analyses - all analyses are integrated in one single user-friendly and intuitive software application.
Here are some key features of "CLC Protein Workbench":
· Integrated 3D molecular viewer
· 2 types of alignments
· Phylogenetics
· Secondary protein structure prediction
· Signal Peptide Prediction (SignalP)
· Transmembrane helix prediction (TMHMM)
· Motif search (known patterns)
· Motif search using regular expressions
· Motif search using ProSite patterns
· Pattern discovery (unknown patterns)
· Web based BLAST
· BLAST on local databases
· Batch processing of multiple analyses in one work-step
· Protein family analysis (PFAM)
· Dot plots
· Hydrophobicity analyses
· Antigenicity analyses
· Searches on GenBank, Swiss-Prot, TrEMBL, and PubMed
· Log of actions/analyses performed
Requirements:
· 256 MB RAM required
· 512 MB RAM recommended
· 1024 x 768 display recommended
· Java 3D
Limitations:
· 30 days trial
· nag screen
What's New in This Release: [ read full changelog ]
New features:
· Import list of sequences in csv format: each line in the file represents a sequence with name, optional description, and sequence. Typically useful for importing lists of oligos.
· Advanced view of elements in a folder including batch editing.
· Extract sequences improvements
· You can now drag results from NCBI searches into the view area to open directly (previously you could only drag into a folder to save)
· "Find" in text view now accepts Enter as command to find the next hit
· Importing VectorNTI archives previously resulted in a sequence list. Now it imports as single sequences.
· Export of annotations in GFF format (joined regions not supported)
Bug fixes:
· Fixed tblastn numbering issue
· Problem rendering scatter plots without lines
· DNA strider files could loose name upon import
· Rare misplacement of annotations when editing very large sequences
· Various bug-fixes
