LAMARC 2.1.6

Likelihood Analysis with Metropolis Algorithm using Random Coalescence

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What's new in LAMARC 2.1.6:

  • FIXED: major bug with data likelihood calculations for runs modeling recombination. All runs which inferred recombination rate or held it to a non-zero value in versions 2.1.2 through 2.1.5 should be re-run.
  • FIXED: calculation of invariant data term for SNP data modeled with a per-base error rate. All 2.1.5 runs which used the data uncertainty model on SNP data should be re-run.
  • UPDATED: random number generator to use the Boost library, and added guards against returning values of exactly 0 or 1 for double values. No previous runs need be re-done, but if you had a data set with an unexplained crash, this may fix it.
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LICENSE TYPE:
Apache License 2.0 
FILE SIZE:
7.1 MB
USER RATING:
UNRATED
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DEVELOPED BY:
LAMARC Team
CATEGORY:
C: \ Science / CAD
2 LAMARC Screenshots:
LAMARCLAMARC
LAMARC is a program which estimates population-genetic parameters such as population size, population growth rate, recombination rate, and migration rates.

LAMARC also approximates a summation over all possible genealogies that could explain the observed sample, which may be sequence, SNP, microsatellite, or electrophoretic data.

Get LAMARC and give it a go to see what it's all about!

Last updated on September 1st, 2011

Runs on: Windows All

#likelihood analysis #population growth rate #population analysis #population #growth rate #analysis #analyzer

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