treecat is a small application written in Java that is able to take several genomes and their relationships in a phylogenetic tree into account to estimate a possible ordering of the contigs.
A so called layout graph shows the unique order where possible and gives alternatives where necessary. The layout graph is calculated based on the matches to several related genomes as well as the information given by a phylogenetic tree of the involved species. Give treecat a try to see what it's really capable of!
Requirements:
· Java
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