What's new in GlycoWorkbench 2.1 Build 146
Aug 17, 2012
- (following are usability fixes for Mac OS X users)
- Command key press now triggers all key bindings bound to Ctrl (i.e. Ctrl+A and Cmd+A both work).
New in GlycoWorkbench 2.1 Build 139 (May 10, 2012)
- Fixed blocking behavior of settings dialog box on various flavors of Windows.
New in GlycoWorkbench 2.1 Build 137 (May 8, 2012)
- GlycoWorkbench appears to have always read the attribute "is_msms" as "is_msm" which meant that if a user manually changed the MS level it would not be reflected in the interface if the user saved and then re-opened the session.
- Fixed a NullPointerException being thrown when a session is opened which contains imported spectra and then the user attempts to reassign the spectra.
New in GlycoWorkbench 2.1 Build 133 (Apr 21, 2012)
- Improved peak parsing routine to allow for three column CSV formatted files where the third column can be relative intensity or charge state.
New in GlycoWorkbench 2.1 Build 131 (Apr 21, 2012)
- Before computing peak centroids we now store the current config, destroy the current instance, and reload the config (to get around the same issue we see on GlycoWorkbench first run)
New in GlycoWorkbench 2.1 Build 128 (Apr 21, 2012)
- Fixed bug which stopped the cascade annotation routine from finding matching peaks within an accuracy window
- Changed structure pull threshold from 0.0001 PPM to 2 Da
- Fixed multiple issues resulting in a scans MS level being incorrectly set
- Fixed issues relating to peak picking and cascading annotations
- Ribbon is now minimized by default to free up some vertical space
- Quick access buttons have been added
- Fixed multiple issues with FileChooser dialog boxes not defaulting to the correct FileFilter
- Fixed issues with the linkage and structure tool bars not wrapping correctly (better support for small screens)
- Split spectrum toolbar in two (better support for small screens)
- Wiki help page is manipulated by GlycoWorkbench to remove left and top tool bar areas
New in GlycoWorkbench 2.1 Build 110 (Apr 21, 2012)
- Updated Windows executables so that they are compatible with JRE 7
- Minor updates to the handling of WGGDS resources
- Delayed start-up of Profiler plugin for faster startup
- Updated manual (in the previous version the new URL wasn't deployed correctly)
- Slight change to the work flow of a cascade annotation
New in GlycoWorkbench 2.1 Build 105 (Apr 21, 2012)
- Added isotope specification support for all molecules
- Added heavy permethylation as a derivatization
- Added amine substituent
- De-selecting "Show reducing end" now works for all reducing ends
- Added ability to copy in silico generated fragment m/z values to peak list (for testing purposes)
- Annotation system can now try (if asked) all possible ion combinations (i.e. glycan structure is 2Na, annotator will try all 2Na and 1Na fragments)
- Added ability to customize core types gallery
- Added ability to customize terminal types gallery
- Added ability to add custom Residues
- Added ability to create custom substituents
- Added ability to create custom reducing ends
- Added ability to create custom modifications
- Added ability to store definition files (Residues, etc.) on a remote server
- Added ability to customize all symbolic notations (including adding new residues)
- Added ability to customize Residue fragmentation
- Redirected help system to new version 2.1 manual (although not finished quite yet)
- Added ability to customize builtin structure dictionaries
- Completed support for WGGDS web service databases
New in GlycoWorkbench 2.0 Build 96 (Apr 21, 2012)
- Changes to profiler database search options
- Removed sequences from dictionaries with nested repeats
- Structures on the glycan canvas with repeating units can now be copied and pasted
- m/z is calculated for structures with repeating units of specified size (i.e. min and max are equal)
- Support for WGGDS substructure queries (disabled for now)
New in GlycoWorkbench 2.0 Build 93 (Apr 21, 2012)
- Fixed bug which caused GWB to throw an exception on startup when the remembered ion count for H2PO4 >0
New in GlycoWorkbench 2.0 Build 91 (Apr 21, 2012)
- Added support for Cl- and H2PO4-
New in GlycoWorkbench 2.0 Build 90 (Apr 21, 2012)
- Added ability to add all peaks from a peak list to a report
- Added checkbox to clear existing annotations before carrying out an annotation run
- Updated DJNativeSwing and SWT libraries to latest version - (required to allow the GWB help system to work with newer web browsers)
- Added missing avalon library - which was preventing PDF export
New in GlycoWorkbench 2.0 Alpha 2 Build 83 (Apr 21, 2012)
- Fixed broken Glyco-Peakfinder plugin
- Fixed potential issues with the update link
- Fixed possible exception being thrown on startup
New in GlycoWorkbench 2.0 Alpha 2 Build 66 (Apr 21, 2012)
- Individual panels can now be detached
- Notification when a new version has been released
- Simplification of application menu
- Fixed broken linkage bar
- Restored the majority of keyboard short cuts
- Improved open button behavior
- Updated icons and other LAF issues