What's new in X!Tandem Viewer 1.13.0
Feb 1, 2017
- LIBRARY UPDATE: Updated utilities to version 4.10.0.
New in X!Tandem Viewer 1.12.0 (Dec 26, 2016)
- FEATURE IMPROVEMENT: Removed the references to the deprecated EBI Nexus repository.
- LIBRARY UPDATE: Updated utilities to version 4.8.7.
New in X!Tandem Viewer 1.11.0 (Dec 26, 2016)
- BUG FIX: Fixed a bug in the parsing of doubly modified peptide terminals.
New in X!Tandem Viewer 1.10.0 (Dec 26, 2016)
- BUG FIX: Fixed a bug in the parsing of fixed PTMs.
New in X!Tandem Viewer 1.9.0 (Dec 26, 2016)
- FEATURE IMPROVEMENT: Updated the project web links in the README.txt file to point to the GitHub pages.
- BUG FIX: Fixed bugs in the ID file reader in the way multiple PTMs targeting the same residue was handled, in particular when one PTM was fixed and the other variable, e.g. as in variable TMT on n-term and fixed TMT on (n-term) K.
New in X!Tandem Viewer 1.8.1 (Dec 26, 2016)
- FEATURE IMPROVEMENT: Removed the peptide map from the IdfileReader to speed up the processing.
- LIBRARY UPDATE: Updated utilities to version 4.0.14.
New in X!Tandem Viewer 1.8.0 (Dec 26, 2016)
- LIBRARY UPDATE: Updated utilities to version 4.0.0.
New in X!Tandem Viewer 1.7.18 (Jan 27, 2015)
- BUG FIX: Fixed a bug in the PTM mapping where modifications where categorized as fixed or variable based on the PTM mass shift alone. Which broke down for iTRAQ searches where the same mass is found as both a fixed and variable modification. The modified amino acid and the location is now used in addition to the mass.
New in X!Tandem Viewer 1.7.17 (Dec 12, 2014)
- LIBRARY UPDATE: Updated utilities to version 3.43.24.
New in X!Tandem Viewer 1.7.15 (Oct 9, 2014)
- FEATURE IMPROVEMENT: Minor corrections in the ID file reader.
New in X!Tandem Viewer 1.7.14 (Sep 13, 2014)
- LIBRARY UPDATE: Updated utilities to version 3.36.0.
New in X!Tandem Viewer 1.7.13 (Aug 23, 2014)
- LIBRARY UPDATE: Updated utilities to version 3.35.0.
New in X!Tandem Viewer 1.7.11 (Aug 12, 2014)
- LIBRARY UPDATE: Updated utilities to version 3.32.1.
New in X!Tandem Viewer 1.7.10 (Aug 12, 2014)
- LIBRARY UPDATE: Updated utilities to version 3.32.0.
New in X!Tandem Viewer 1.7.7 (Aug 12, 2014)
- BUG FIX: The performance parameters are now parsed and kept even when using the skipDetails option.
- LIBRARY UPDATE: Updated utilities to version 3.21.6.
New in X!Tandem Viewer 1.7.6 (Aug 12, 2014)
- LIBRARY UPDATE: Updated utilities to version 3.21.0.
New in X!Tandem Viewer 1.7.5 (Aug 12, 2014)
- BUG FIX: Corrected a bug where wrong PTM sites were returned in the XTandemIdfileReader.
New in X!Tandem Viewer 1.7.4 (Aug 12, 2014)
- LIBRARY UPDATE: Updated utilities to version 3.18.0.
New in X!Tandem Viewer 1.7.3 (Aug 12, 2014)
- FEATURE IMPROVEMENT: Removed the protein remapping in the id file reader.
- LIBRARY UPDATE: Updated utilities to version 3.17.7.
New in X!Tandem Viewer 1.7.1 (Aug 12, 2014)
- BUG FIX: The input (and performance) parameters are now again included when in the import when using the skipDetails option, as these were needed when mapping the PTMs.
New in X!Tandem Viewer 1.7.0 (Aug 12, 2014)
- NEW FEATURE: Added a new import mode where identification details can be skipped.
- LIBRARY UPDATE: Updated utilities to version 3.14.28.
New in X!Tandem Viewer 1.6.0 (Aug 12, 2014)
- BUG FIX: Fixed a bug where the fragment ion mass error was hard coded to 0.3. It can now be set as a parameter in the InSilicoDigester constructor and in the getFragmentIonsForPeptide method in the XTandemFile class. (Note that the accuracy is still hard coded to 0.3 in the viewer.)
New in X!Tandem Viewer 1.1 (Dec 15, 2009)
- NEW FEATURE: The memory settings are no longer hard coded. Error messages in the XTandemViewer are now sent to the ErrorLog text file.
- FEATURE IMPROVEMENT: Spaces in file names is now supported on all Windows platforms.
- BUG FIX: Pressing the Alt key no longer makes the wait icon appear in the main frame.
- BUG FIX: Help dialog: the "go to top of page link" now works.