A program for the inference of demographic history from molecular phylogenies. #Genealogy Interval #Interval Explorer #Demographic History #Genealogy #Explorer #Demographic
The name Genie stands for Genealogy Interval Explorer. Genie was developed to be a program for the inference of demographic history from reconstructed molecular phylogenies.
It is primarily designed for the analysis of phylogenies reconstructed from highly variable viral gene sequences, but can be applied to other types of sequence data that contains a significant amount of phylogenetic information.
GENIE has a new command-line user interface that is similar to that the interface used by PAUP and MrBayes. GENIE commands can either be typed in one at a time, or put together into a file that is then run as a script.
Each GENIE command has the following structure:
commandName commandValue subcommand1=value1 subcommand2=value2 ... ;
What's new in Genie 3.0:
- Trees with non-contemporaneous tips (TipDate trees) can be read in and analysed. This should prove very useful for viral sequence data sets. Parametric demographic models and the classic skyline plot are available for TipDate trees.
- The user interface has been changed from a menu system to a command-line system. Commands can either be typed in or read from a NEXUS format file. The interface is thus similar to the command-line version of PAUP*.
- GENIE now reads and writes NEXUS format trees. PHYLIP format trees are no longer supported.
- Two new methods for optimising the generalised skyline plot have been added.
Genie 3.0
add to watchlist add to download basket send us an update REPORT- runs on:
- Windows All
- file size:
- 428 KB
- filename:
- GENIEv3.0PC.exe
1 screenshot:
- main category:
- Science / CAD
- developer:
- visit homepage
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