DNA sequence assembly utilities. #DNA sequence #DNA assembly #Assemble sequence #DNA #Sequence #Assembly
Staden Package was created as an accessible and fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin).
Now you can make use of this handy tools from multiple platforms and assemble all your DNA sequences in no time at all.
What's new in Staden Package 2.0.0b9:
- Main Gap5 Updates:
- Major overhaul of the consensus algorithm. It now allows for the possibility of SNPs when computing the consensus scores. Also added a discrepancy calculation where it compares the number of observed differences against the expected differences given the quality scores.
- Updated the SAM input/output code to use the new standard for encoding annotations via CT and PT fields. Additionally tag directions are now supported by Gap5.
- New Shuffle Pads and Remove Pad Columns commands. The latter is a fast and simple function, while Shuffle Pads performs full realignments, much like Gap4.
Staden Package 2.0.0b9
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- Windows All
- file size:
- 22.7 MB
14 screenshots:
- main category:
- Science / CAD
- developer:
- visit homepage
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