Locate microsatellite repeats, design locus-specific primers, and tag them. #Microsatellite repeat finder #Primer design #Tag primer #Microsatellite #Repeat #Primer
msatcommander is a Python program written to locate microsatellite (SSR, VNTR, &c) repeats within fasta-formatted sequence or consensus files. msatfinder will search for all di-, tri-, tetra-, penta-, and hexa-nucleotide repeats (with options to search for fewer repeat types and combinations of repeat types).
Give msatcommander a try to fully assess its capabilities!
What's new in msatcommander 0.8.2:
- fixed issue with occasional improper treatment of overlapping bases btw. primer and tag
- fixed issue with improper selection of repeat regions as primer binding sites using a custom mispriming file
- altered primer product size definitions (now just 150-450 bp)
- added ability to GTTT 'pigtail' the non-tagged primer (see Browstein et al. 1996 in References)
msatcommander 0.8.2
add to watchlist add to download basket send us an update REPORT- runs on:
- Windows All
- file size:
- 5.7 MB
- filename:
- msatcommander-0.8.2-WINXP.zip
1 screenshot:
- main category:
- Science / CAD
- developer:
- visit homepage
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